Pseudomonas aeruginosa PAO1, PA5342

Gene Feature Overview

Strain	Pseudomonas aeruginosa PAO1 (Stover et al., 2000) GCF_000006765.1|latest
Locus Tag	PA5342
Name
Replicon	chromosome
Genomic location	6010258 - 6011058 (- strand)
Transposon Mutants	2 transposon mutants in PAO1
Transposon Mutants in orthologs	2 transposon mutants in orthologs

Cross-References

RefSeq	NP_254029.1
GI	15600535
Affymetrix	PA5342_at
DNASU	PaCD00008310
Entrez	877611
GenBank	AAG08727.1
INSDC	AAG08727.1
NCBI Locus Tag	PA5342
protein_id(GenBank)	gb|AAG08727.1|AE004946_11|gnl|PseudoCAP|PA5342
TIGR	NTL03PA05343
UniParc	UPI00000C5FB2
UniProtKB Acc	Q9HTL6
UniProtKB ID	Q9HTL6_PSEAE
UniRef100	UniRef100_W0YZA9
UniRef50	UniRef50_W6R237
UniRef90	UniRef90_A6VEE9

Product

Feature Type	CDS
Coding Frame	1
Product Name	probable transcriptional regulator Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Charge (pH 7)	10.30
Kyte-Doolittle Hydrophobicity Value	-0.334
Molecular Weight (kDa)	29.6
Isoelectric Point (pI)	10.09

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 342 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004910 (384 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA5342 Search term: probable transcriptional regulator

Human Homologs

References