Pseudomonas aeruginosa PAO1, PA0416 (chpD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA0416
Name
chpD
Replicon chromosome
Genomic location 463079 - 463873 (+ strand)
Transposon Mutants 1 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_249107.1
GI 15595613
Affymetrix PA0416_at
Entrez 878123
GenBank AAG03805.1
INSDC AAG03805.1
NCBI Locus Tag PA0416
protein_id(GenBank) gb|AAG03805.1|AE004478_10|gnl|PseudoCAP|PA0416
TIGR NTL03PA00417
UniParc UPI00000D4216
UniProtKB Acc G3XCU1
UniProtKB ID G3XCU1_PSEAE
UniRef100 UniRef100_O87004
UniRef50 UniRef50_A0A077JK58
UniRef90 UniRef90_A0A077JK58

Product

Feature Type CDS
Coding Frame 1
Product Name
probable transcriptional regulator
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 5.65
Kyte-Doolittle Hydrophobicity Value -0.225
Molecular Weight (kDa) 28.8
Isoelectric Point (pI) 9.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Virulence Evidence

Source 1
Database VFDB : VF0082
Category Type IV pili twitching motility related proteins
Evidence
Host Organism
Notes
Reference 9224879

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 373 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000407 (334 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0416
Search term: chpD

References

No references are associated with this feature.