Pseudomonas aeruginosa PAO1, PA0852 (cbpD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA0852
Name
cbpD
Replicon chromosome
Genomic location 930653 - 931822 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_249543.1
GI 15596049
Affymetrix PA0852_cpbD_at
Entrez 877771
GenBank AAG04241.1
INSDC AAG04241.1
NCBI Locus Tag PA0852
protein_id(GenBank) gb|AAG04241.1|AE004520_4|gnl|PseudoCAP|PA0852
TIGR NTL03PA00853
UniParc UPI00000C518B
UniProtKB Acc Q9I589
UniProtKB ID CBPD_PSEAE
UniRef100 UniRef100_Q9I589
UniRef50 UniRef50_Q9I589
UniRef90 UniRef90_Q9I589

Product

Feature Type CDS
Coding Frame 1
Product Name
chitin-binding protein CbpD precursor
Product Name Confidence: Class 1
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -0.57
Kyte-Doolittle Hydrophobicity Value -0.352
Molecular Weight (kDa) 41.9
Isoelectric Point (pI) 6.85

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 1
Extracellular Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 75 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000819 (310 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0852
Search term: cbpD

References

Secretion of elastinolytic enzymes and their propeptides by Pseudomonas aeruginosa.
Braun P, de Groot A, Bitter W, Tommassen J
J Bacteriol 1998 Jul;180(13):3467-9
PubMed ID: 9642203
Identification of a chitin-binding protein secreted by Pseudomonas aeruginosa.
Folders J, Tommassen J, van Loon LC, Bitter W
J Bacteriol 2000 Mar;182(5):1257-63
PubMed ID: 10671445
Two genes encoding an endoglucanase and a cellulose-binding protein are clustered and co-regulated by a TTA codon in Streptomyces halstedii JM8.
Garda AL, Fernández-Abalos JM, Sánchez P, Ruiz-Arribas A, Santamaría RI
Biochem. J. 1997 Jun;324 ( Pt 2)
PubMed ID: 9182697
Mep72, a metzincin protease that is preferentially secreted by biofilms of Pseudomonas aeruginosa.
Passmore IJ, Nishikawa K, Lilley KS, Bowden SD, Chung JC, Welch M
J. Bacteriol. 2015 Feb;197(4):762-73
PubMed ID: 25488299