Pseudomonas aeruginosa PAO1, PA1023

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA1023
Name
Replicon chromosome
Genomic location 1108949 - 1109866 (+ strand)
Transposon Mutants 3 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_249714.1
GI 15596220
Affymetrix PA1023_at
DNASU PaCD00006469
Entrez 878431
GenBank AAG04412.1
INSDC AAG04412.1
NCBI Locus Tag PA1023
protein_id(GenBank) gb|AAG04412.1|AE004534_10|gnl|PseudoCAP|PA1023
TIGR NTL03PA01024
UniParc UPI00000C520B
UniProtKB Acc Q9I4V1
UniProtKB ID Q9I4V1_PSEAE
UniRef100 UniRef100_A0A071KUM3
UniRef50 UniRef50_B7RNN2
UniRef90 UniRef90_A6V9H8

Product

Feature Type CDS
Coding Frame 1
Product Name
probable short-chain dehydrogenase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -1.13
Kyte-Doolittle Hydrophobicity Value -0.098
Molecular Weight (kDa) 32.8
Isoelectric Point (pI) 6.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 649 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000985 (320 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1023

Human Homologs

Ensembl 97, assembly GRCh38.p12
hydroxysteroid 17-beta dehydrogenase 4 [Source:HGNC Symbol;Acc:HGNC:5213]
E-value: 7.6e-52
Percent Identity: 41.6

Human Homologs

Ensembl 97, assembly GRCh38.p12
hydroxysteroid 17-beta dehydrogenase 4 [Source:HGNC Symbol;Acc:HGNC:5213]
E-value: 7.6e-52
Percent Identity: 41.6

Human Homologs

Ensembl 97, assembly GRCh38.p12
hydroxysteroid 17-beta dehydrogenase 4 [Source:HGNC Symbol;Acc:HGNC:5213]
E-value: 7.6e-52
Percent Identity: 41.6

References

No references are associated with this feature.