Pseudomonas aeruginosa PAO1, PA1300

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA1300
Name
Replicon chromosome
Genomic location 1409949 - 1410476 (+ strand)
Transposon Mutants 1 transposon mutants in PAO1

Cross-References

RefSeq NP_249991.1
GI 15596497
Affymetrix PA1300_at
DNASU PaCD00006598
Entrez 881504
GenBank AAG04689.1
INSDC AAG04689.1
NCBI Locus Tag PA1300
protein_id(GenBank) gb|AAG04689.1|AE004559_8|gnl|PseudoCAP|PA1300
TIGR NTL03PA01301
UniParc UPI00000C52FB
UniProtKB Acc Q9I444
UniProtKB ID Q9I444_PSEAE
UniRef100 UniRef100_W0YNZ3
UniRef50 UniRef50_Q4KGY1
UniRef90 UniRef90_A6V8R0

Product

Feature Type CDS
Coding Frame 1
Product Name
ECF sigma factor
Product Name Confidence: Class 2
Synonyms probable sigma-70 factor, ECF subfamily
Evidence for Translation
Charge (pH 7) 3.89
Kyte-Doolittle Hydrophobicity Value -0.621
Molecular Weight (kDa) 19.8
Isoelectric Point (pI) 9.31

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 350 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001243 (402 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1300
Search term: ECF sigma factor

References

Characterization of five novel Pseudomonas aeruginosa cell-surface signalling systems.
Llamas MA, Mooij MJ, Sparrius M, Vandenbroucke-Grauls CM, Ratledge C, Bitter W
Mol. Microbiol. 2008 Jan;67(2):458-72
PubMed ID: 18086184