Pseudomonas aeruginosa PAO1, PA2505 (opdT)

Gene Feature Overview

Strain	Pseudomonas aeruginosa PAO1 (Stover et al., 2000) GCF_000006765.1|latest
Locus Tag	PA2505
Name	opdT Synonym: oprD3 Synonym: opdT
Replicon	chromosome
Genomic location	2822574 - 2823920 (- strand)
Transposon Mutants	2 transposon mutants in PAO1
Transposon Mutants in orthologs	7 transposon mutants in orthologs

Cross-References

RefSeq	NP_251195.1
GI	15597701
Affymetrix	PA2505_at
Entrez	882988
GenBank	AAG05893.1
INSDC	AAG05893.1
NCBI Locus Tag	PA2505
protein_id(GenBank)	gb|AAG05893.1|AE004677_10|gnl|PseudoCAP|PA2505
TIGR	NTL03PA02505
UniParc	UPI00000C570F
UniProtKB Acc	Q9I0X7
UniProtKB ID	Q9I0X7_PSEAE
UniRef100	UniRef100_W0YSQ6
UniRef50	UniRef50_A0A024HAV0
UniRef90	UniRef90_W0WH26

Product

Feature Type	CDS
Coding Frame	1
Product Name	tyrosine porin OpdT Product Name Confidence: Class 1
Synonyms	tyrosine porin OpdT
Evidence for Translation	Detected using LC-MS/MS (49.79 kDa, PMID:21751344)
Charge (pH 7)	-10.52
Kyte-Doolittle Hydrophobicity Value	-0.518
Molecular Weight (kDa)	49.8
Isoelectric Point (pI)	4.69

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 2 Outer Membrane Class 3 20472543 Outer Membrane Vesicle Class 1
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 19 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000187 (1579 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA2505 Search term: opdT Search term: tyrosine porin OpdT

Human Homologs

References

Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa. Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS Proteomics 2011 Aug;11(16):3424-9 PubMed ID: 21751344