Pseudomonas aeruginosa PAO1, PA5406

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA5406
Name
Replicon chromosome
Genomic location 6083753 - 6084085 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1

Cross-References

RefSeq NP_254093.1
GI 15600599
Affymetrix PA5406_at
DNASU PaCD00008337
Entrez 880092
GenBank AAG08791.1
INSDC AAG08791.1
NCBI Locus Tag PA5406
protein_id(GenBank) gb|AAG08791.1|AE004953_5|gnl|PseudoCAP|PA5406
TIGR NTL03PA05407
UniParc UPI00000C5FEB
UniProtKB Acc Q9HTF8
UniProtKB ID Q9HTF8_PSEAE
UniRef100 UniRef100_W0Z2G9
UniRef50 UniRef50_Q4KJE8
UniRef90 UniRef90_B7V5U8

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Detected by iTRAQ (PMID:21863142).
Charge (pH 7) -10.76
Kyte-Doolittle Hydrophobicity Value -0.666
Molecular Weight (kDa) 12.4
Isoelectric Point (pI) 4.03

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 4 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004963 (511 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5406

References

Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011 ;2
PubMed ID: 21863142