Pseudomonas aeruginosa PAO1, PA5540

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA5540
Name
Replicon chromosome
Genomic location 6232555 - 6233115 (+ strand)
Transposon Mutants 3 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_254227.1
GI 15600733
Affymetrix PA5540_at
DNASU PaCD00008386
Entrez 877617
GenBank AAG08925.1
INSDC AAG08925.1
NCBI Locus Tag PA5540
protein_id(GenBank) gb|AAG08925.1|AE004966_7|gnl|PseudoCAP|PA5540
TIGR NTL03PA05541
UniParc UPI00000C6062
UniProtKB Acc Q9HT34
UniProtKB ID Q9HT34_PSEAE
UniRef100 UniRef100_W0Z295
UniRef50 UniRef50_Q39AS6
UniRef90 UniRef90_A0A077K2B0

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -4.96
Kyte-Doolittle Hydrophobicity Value 0.098
Molecular Weight (kDa) 19.8
Isoelectric Point (pI) 5.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 470 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005073 (408 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5540

References

No references are associated with this feature.