Pseudomonas fluorescens Pf0-1, Pfl01_0131

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens Pf0-1
GCF_000012445.1|latest
Locus Tag
Pfl01_0131
Name
Replicon chromosome
Genomic location 142534 - 144480 (+ strand)

Cross-References

RefSeq YP_345864.1
GI 77456359
Entrez 3717874
NCBI Locus Tag Pfl01_0131

Product

Feature Type CDS
Coding Frame 1
Product Name
diguanylate cyclase/phosphodiesterase
Synonyms
Evidence for Translation
Charge (pH 7) -9.44
Kyte-Doolittle Hydrophobicity Value -0.040
Molecular Weight (kDa) 71785.6
Isoelectric Point (pI) 5.57

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3PJV LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD periplasmic domain Pseudomonas fluorescens 1.7727 X-RAY DIFFRACTION 100.0
3PJW LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, I23 Pseudomonas fluorescens 3.1006 X-RAY DIFFRACTION 100.0
3PJX LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32 Pseudomonas fluorescens 2.0002 X-RAY DIFFRACTION 100.0
3PJT LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221 Pseudomonas fluorescens 2.5154 X-RAY DIFFRACTION 100.0
3PJU LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522 Pseudomonas fluorescens 2.4991 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001350 (454 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pfl01_0131

Human Homologs

References

No references are associated with this feature.