Pseudomonas fluorescens Pf0-1, Pfl01_0994 (rnc)

Gene Feature Overview

Strain	Pseudomonas fluorescens Pf0-1 GCF_000012445.1|latest
Locus Tag	Pfl01_0994
Name	rnc
Replicon	chromosome
Genomic location	1156288 - 1156977 (+ strand)

Cross-References

RefSeq	YP_346726.1
GI	77457221
EC Number	3.1.26.3
Entrez	3715996
INSDC	ABA72737.1
NCBI Locus Tag	Pfl01_0994
UniParc	UPI0000388801
UniProtKB Acc	Q3KHL9
UniProtKB ID	RNC_PSEPF
UniRef100	UniRef100_Q3KHL9
UniRef50	UniRef50_Q4KHT1
UniRef90	UniRef90_Q4KHT1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7)	-4.60
Kyte-Doolittle Hydrophobicity Value	-0.079
Molecular Weight (kDa)	25.4
Isoelectric Point (pI)	5.05

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000744 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Pfl01_0994 Search term: rnc Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000424161 drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904] E-value: 1.5e-11 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000425979 drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904] E-value: 1.5e-11 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000339845 drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904] E-value: 1.5e-11 Percent Identity: 33.6

References