Pseudomonas fluorescens Pf0-1, Pfl01_5125

Gene Feature Overview

Strain	Pseudomonas fluorescens Pf0-1 GCF_000012445.1|latest
Locus Tag	Pfl01_5125
Name
Replicon	chromosome
Genomic location	5758005 - 5759129 (- strand)

Cross-References

RefSeq	YP_350853.1
GI	77461346
Entrez	3717043
INSDC	ABA76862.1
NCBI Locus Tag	Pfl01_5125
UniParc	UPI00003C7B48
UniProtKB Acc	Q3K5U2
UniProtKB ID	Q3K5U2_PSEPF
UniRef100	UniRef100_A0A0C1WFK8
UniRef50	UniRef50_B9KZG1
UniRef90	UniRef90_G8Q0B0

Product

Feature Type	CDS
Coding Frame	1
Product Name	spermidine/putrescine ABC transporter ATP-binding subunit
Synonyms
Evidence for Translation
Charge (pH 7)	-3.67
Kyte-Doolittle Hydrophobicity Value	-0.120
Molecular Weight (kDa)	41.1
Isoelectric Point (pI)	6.36

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000586 (511 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Pfl01_5125 Search term: spermidine/putrescine ABC transporter ATP-binding subunit

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000355637 ATP binding cassette subfamily B member 10 [Source:HGNC Symbol;Acc:HGNC:41] E-value: 2.5e-19 Percent Identity: 31.0

References