Pseudomonas fluorescens F113, PSF113_0070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_0070
Name
Replicon chromosome
Genomic location 77814 - 78371 (- strand)

Cross-References

RefSeq YP_005205500.1
GI 378948012
EC Number 3.2.2.20
Entrez 11828144
INSDC AEV60105.1
NCBI Locus Tag PSF113_0070
UniParc UPI00023B3AB7
UniProtKB Acc G8PX86
UniProtKB ID G8PX86_PSEFL
UniRef100 UniRef100_G8PX86
UniRef50 UniRef50_Q88RQ9
UniRef90 UniRef90_G8PX86

Product

Feature Type CDS
Coding Frame 1
Product Name
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
Synonyms
Evidence for Translation
Charge (pH 7) -0.11
Kyte-Doolittle Hydrophobicity Value -0.219
Molecular Weight (kDa) 20.7
Isoelectric Point (pI) 6.95

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000022 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_0070

Human Homologs

Ensembl 110, assembly GRCh38.p14
yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905]
E-value: 3.5e-11
Percent Identity: 28.6

References

No references are associated with this feature.