Pseudomonas fluorescens F113, PSF113_0206 (lapD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens F113
GCF_000237065.1|latest |
| Locus Tag |
PSF113_0206
|
| Name |
lapD
|
| Replicon | chromosome |
| Genomic location | 229042 - 230988 (+ strand) |
Cross-References
| RefSeq | YP_005205632.1 |
| GI | 378948144 |
| Entrez | 11828283 |
| NCBI Locus Tag | PSF113_0206 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
protein LapD
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -8.00 |
| Kyte-Doolittle Hydrophobicity Value | -0.016 |
| Molecular Weight (kDa) | 71566.4 |
| Isoelectric Point (pI) | 6.18 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3PJW | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, I23 | Pseudomonas fluorescens | 3.1006 | X-RAY DIFFRACTION | 90.4 |
| 3PJT | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221 | Pseudomonas fluorescens | 2.5154 | X-RAY DIFFRACTION | 91.9 |
| 3PJU | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522 | Pseudomonas fluorescens | 2.4991 | X-RAY DIFFRACTION | 91.9 |
| 3PJX | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32 | Pseudomonas fluorescens | 2.0002 | X-RAY DIFFRACTION | 90.4 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 421 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001350 (454 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSF113_0206
Search term: lapD
Search term: protein LapD
|
Human Homologs
References
No references are associated with this feature.