Pseudomonas fluorescens F113, PSF113_4479 (lysC)

Gene Feature Overview

Strain	Pseudomonas fluorescens F113 GCF_000237065.1|latest
Locus Tag	PSF113_4479
Name	lysC
Replicon	chromosome
Genomic location	5232583 - 5233824 (- strand)

Cross-References

RefSeq	YP_005209864.1
GI	378952376
EC Number	2.7.2.4
Entrez	11832582
INSDC	AEV64469.1
NCBI Locus Tag	PSF113_4479
UniParc	UPI00023B4959
UniProtKB Acc	G8Q6P2
UniProtKB ID	G8Q6P2_PSEFL
UniRef100	UniRef100_G8Q6P2
UniRef50	UniRef50_A4VJB4
UniRef90	UniRef90_A4VJB4

Product

Feature Type	CDS
Coding Frame	1
Product Name	protein LysC
Synonyms
Evidence for Translation
Charge (pH 7)	-10.56
Kyte-Doolittle Hydrophobicity Value	0.015
Molecular Weight (kDa)	44.4
Isoelectric Point (pI)	4.93

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
5YEI	TRANSFERASE	09/17/17	Mechanistic insight into the regulation of Pseudomonas aeruginosa aspartate kinase	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	2.301	X-RAY DIFFRACTION	90.8

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000871 (530 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSF113_4479 Search term: lysC Search term: protein LysC

Human Homologs

References