Pseudomonas fluorescens SBW25, PFLU5649 (soxA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5649
Name
soxA
Replicon chromosome
Genomic location 6187997 - 6191014 (- strand)

Cross-References

RefSeq YP_002875143.1
GI 229593024
EC Number 1.5.3.1
Entrez 7817185
INSDC CAY52963.1
UniParc UPI00019DAE7E
UniProtKB Acc C3K397
UniProtKB ID C3K397_PSEFS
UniRef100 UniRef100_C3K397
UniRef50 UniRef50_D7I638
UniRef90 UniRef90_D7I638

Product

Feature Type CDS
Coding Frame 1
Product Name
sarcosine oxidase subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7) 2.28
Kyte-Doolittle Hydrophobicity Value -0.197
Molecular Weight (kDa) 109.5
Isoelectric Point (pI) 7.24

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 494 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004972 (512 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5649
Search term: soxA

Human Homologs

Ensembl 110, assembly GRCh38.p14
dimethylglycine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24475]
E-value: 1.7e-30
Percent Identity: 26.8

References

No references are associated with this feature.