Pseudomonas putida GB-1, PputGB1_2402

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_2402
Name
Replicon chromosome
Genomic location 2687420 - 2688529 (- strand)

Cross-References

RefSeq YP_001668637.1
GI 167033406
Entrez 5870191
INSDC ABY98301.1
NCBI Locus Tag PputGB1_2402
UniParc UPI000164C10C
UniProtKB Acc B0KQN6
UniProtKB ID B0KQN6_PSEPG
UniRef100 UniRef100_B0KQN6
UniRef50 UniRef50_I7B3J9
UniRef90 UniRef90_I7B3J9

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -2.49
Kyte-Doolittle Hydrophobicity Value -0.178
Molecular Weight (kDa) 40857.1
Isoelectric Point (pI) 6.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3GRA Transcription regulator 03/25/09 Crystal structure of AraC family transcriptional regulator from Pseudomonas putida Pseudomonas putida 2.3 X-RAY DIFFRACTION 96.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 385 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001516 (480 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_2402

Human Homologs

References

No references are associated with this feature.