Pseudomonas putida GB-1, PputGB1_3221

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_3221
Name
Replicon chromosome
Genomic location 3606556 - 3610140 (- strand)

Cross-References

RefSeq YP_001669449.1
GI 167034218
Entrez 5871006
INSDC ABY99113.1
NCBI Locus Tag PputGB1_3221
UniParc UPI0000F25BAA
UniProtKB Acc B0KHN1
UniProtKB ID B0KHN1_PSEPG
UniRef100 UniRef100_B0KHN1
UniRef50 UniRef50_Q88FL8
UniRef90 UniRef90_B0KHN1

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein IcmF
Synonyms
Evidence for Translation
Charge (pH 7) 18.12
Kyte-Doolittle Hydrophobicity Value -0.283
Molecular Weight (kDa) 135000.8
Isoelectric Point (pI) 9.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 102 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000076 (865 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_3221

Human Homologs

References

No references are associated with this feature.