Pseudomonas putida GB-1, PputGB1_4380 (algU)

Gene Feature Overview

Strain	Pseudomonas putida GB-1 GCF_000019125.1|latest
Locus Tag	PputGB1_4380
Name	algU
Replicon	chromosome
Genomic location	4905363 - 4905944 (- strand)

Cross-References

RefSeq	YP_001670604.1
GI	167035373
Entrez	5872187
INSDC	ABZ00269.1
NCBI Locus Tag	PputGB1_4380
UniParc	UPI000000EEEC
UniProtKB Acc	B0KV33
UniProtKB ID	B0KV33_PSEPG
UniRef100	UniRef100_I3US17
UniRef50	UniRef50_D0ZSY9
UniRef90	UniRef90_Q06198

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma factor AlgU
Synonyms
Evidence for Translation
Charge (pH 7)	-5.83
Kyte-Doolittle Hydrophobicity Value	-0.525
Molecular Weight (kDa)	22.3
Isoelectric Point (pI)	5.16

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6IN7	TRANSCRIPTION	10/24/18	Crystal structure of AlgU in complex with MucA(cyto)	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	1.96	X-RAY DIFFRACTION	90.1

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000736 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PputGB1_4380 Search term: algU Search term: RNA polymerase sigma factor AlgU

Human Homologs

References