Pseudomonas putida S16, PPS_0037

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_0037
Name
Replicon chromosome
Genomic location 40542 - 41366 (+ strand)

Cross-References

RefSeq YP_004699506.1
GI 339484978
Entrez 10935709
INSDC AEJ10626.1
NCBI Locus Tag PPS_0037
UniParc UPI0002172350
UniProtKB Acc F8FU76
UniProtKB ID F8FU76_PSEP6
UniRef100 UniRef100_A0A099N6U3
UniRef50 UniRef50_A1S1K8
UniRef90 UniRef90_Q88RQ5

Product

Feature Type CDS
Coding Frame 1
Product Name
shikimate 5-dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -5.40
Kyte-Doolittle Hydrophobicity Value -0.026
Molecular Weight (kDa) 29.4
Isoelectric Point (pI) 5.03

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4OMU OXIDOREDUCTASE 01/27/14 Crystal structure of shikimate dehydrogenase (AroE) from Pseudomonas putida Pseudomonas putida 1.65 X-RAY DIFFRACTION 98.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 605 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000025 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_0037

Human Homologs

References

No references are associated with this feature.