Pseudomonas putida S16, PPS_0315

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_0315
Name
Replicon chromosome
Genomic location 365729 - 366982 (+ strand)

Cross-References

RefSeq YP_004699780.1
GI 339485252
Entrez 10935983
INSDC AEJ10900.1
NCBI Locus Tag PPS_0315
UniParc UPI000217265C
UniProtKB Acc F8FYE2
UniProtKB ID F8FYE2_PSEP6
UniRef100 UniRef100_A0A099N8V7
UniRef50 UniRef50_P9WGI9
UniRef90 UniRef90_Q48CP3

Product

Feature Type CDS
Coding Frame 1
Product Name
serine hydroxymethyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -5.26
Kyte-Doolittle Hydrophobicity Value -0.078
Molecular Weight (kDa) 44.6
Isoelectric Point (pI) 6.24

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 654 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003094 (1150 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_0315

Human Homologs

Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 6.4e-93
Percent Identity: 47.6
Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 6.4e-93
Percent Identity: 47.6
Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 6.4e-93
Percent Identity: 47.6
Ensembl 110, assembly GRCh38.p14
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value: 6.4e-93
Percent Identity: 47.6

References

No references are associated with this feature.