Pseudomonas putida S16, PPS_2978

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2978
Name
Replicon chromosome
Genomic location 3338070 - 3339002 (- strand)

Cross-References

RefSeq YP_004702407.1
GI 339487879
Entrez 10938610
INSDC AEJ13527.1
NCBI Locus Tag PPS_2978
UniParc UPI00021732DC
UniProtKB Acc F8G0A4
UniProtKB ID F8G0A4_PSEP6
UniRef100 UniRef100_A0A099N2L0
UniRef50 UniRef50_B1J9F2
UniRef90 UniRef90_B1J9F2

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -2.57
Kyte-Doolittle Hydrophobicity Value -0.015
Molecular Weight (kDa) 34.6
Isoelectric Point (pI) 6.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 377 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG016346 (37 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2978

Human Homologs

References

No references are associated with this feature.