Pseudomonas putida S16, PPS_4215

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_4215
Name
Replicon chromosome
Genomic location 4779090 - 4779779 (- strand)

Cross-References

RefSeq YP_004703634.1
GI 339489106
Entrez 10939837
INSDC AEJ14754.1
NCBI Locus Tag PPS_4215
UniParc UPI000217356B
UniProtKB Acc F8G397
UniProtKB ID F8G397_PSEP6
UniRef100 UniRef100_A0A099N602
UniRef50 UniRef50_Q4KHT1
UniRef90 UniRef90_Q4KHT1

Product

Feature Type CDS
Coding Frame 1
Product Name
ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7) -2.36
Kyte-Doolittle Hydrophobicity Value -0.275
Molecular Weight (kDa) 25.6
Isoelectric Point (pI) 5.84

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000744 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_4215
Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 7.0e-17
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 7.0e-17
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 7.0e-17
Percent Identity: 30.1

References

No references are associated with this feature.