Pseudomonas putida S16, PPS_4434

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_4434
Name
Replicon chromosome
Genomic location 5020658 - 5021233 (- strand)

Cross-References

RefSeq YP_004703845.1
GI 339489317
Entrez 10940048
INSDC AEJ14965.1
NCBI Locus Tag PPS_4434
UniParc UPI0002173BE7
UniProtKB Acc F8G5W6
UniProtKB ID F8G5W6_PSEP6
UniRef100 UniRef100_A0A099N6E1
UniRef50 UniRef50_Q4KI14
UniRef90 UniRef90_Q88E60

Product

Feature Type CDS
Coding Frame 1
Product Name
ECF subfamily RNA polymerase sigma-24 factor
Synonyms
Evidence for Translation
Charge (pH 7) 2.84
Kyte-Doolittle Hydrophobicity Value -0.365
Molecular Weight (kDa) 21.2
Isoelectric Point (pI) 8.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 338 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000147 (835 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_4434

Human Homologs

References

No references are associated with this feature.