Pseudomonas putida S16, PPS_4970

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_4970
Name
Replicon chromosome
Genomic location 5641598 - 5642410 (- strand)

Cross-References

RefSeq YP_004704377.1
GI 339489849
Entrez 10940580
INSDC AEJ15497.1
NCBI Locus Tag PPS_4970
UniParc UPI0002173BF8
UniProtKB Acc F8FWV1
UniProtKB ID F8FWV1_PSEP6
UniRef100 UniRef100_F8FWV1
UniRef50 UniRef50_Q4K4A5
UniRef90 UniRef90_Q4K4A5

Product

Feature Type CDS
Coding Frame 1
Product Name
formamidopyrimidine-DNA glycosylase
Synonyms
Evidence for Translation
Charge (pH 7) 5.08
Kyte-Doolittle Hydrophobicity Value -0.196
Molecular Weight (kDa) 30235.7
Isoelectric Point (pI) 8.89

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 442 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000348 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_4970

Human Homologs

References

No references are associated with this feature.