Pseudomonas putida S16, PPS_5027

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5027
Name
Replicon chromosome
Genomic location 5704319 - 5705365 (- strand)

Cross-References

RefSeq YP_004704434.1
GI 339489906
Entrez 10940637
INSDC AEJ15554.1
NCBI Locus Tag PPS_5027
UniParc UPI0002173D1D
UniProtKB Acc F8FY50
UniProtKB ID F8FY50_PSEP6
UniRef100 UniRef100_F8FY50
UniRef50 UniRef50_Q4KK51
UniRef90 UniRef90_T2HDV1

Product

Feature Type CDS
Coding Frame 1
Product Name
RND family efflux transporter, MFP subunit
Synonyms
Evidence for Translation
Charge (pH 7) -2.30
Kyte-Doolittle Hydrophobicity Value -0.109
Molecular Weight (kDa) 36820.5
Isoelectric Point (pI) 5.85

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 407 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000154 (998 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5027

Human Homologs

References

No references are associated with this feature.