Pseudomonas putida BIRD-1, PPUBIRD1_0237 (gabT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_0237
Name
gabT
Replicon chromosome
Genomic location 284004 - 285281 (+ strand)

Cross-References

RefSeq YP_005928148.1
GI 386009871
EC Number 2.6.1.19
EC Number 2.6.1.22
Entrez 12518473
NCBI Locus Tag PPUBIRD1_0237

Product

Feature Type CDS
Coding Frame 1
Product Name
GabT protein
Synonyms
Evidence for Translation
Charge (pH 7) -4.27
Kyte-Doolittle Hydrophobicity Value 0.228
Molecular Weight (kDa) 44.8
Isoelectric Point (pI) 6.12

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 639 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000263 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_0237
Search term: gabT
Search term: GabT protein

Human Homologs

Ensembl 110, assembly GRCh38.p14
ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091]
E-value: 2.9e-40
Percent Identity: 29.8

References

No references are associated with this feature.