Pseudomonas putida BIRD-1, PPUBIRD1_0353 (glyA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_0353
|
| Name |
glyA
|
| Replicon | chromosome |
| Genomic location | 407497 - 408750 (+ strand) |
Cross-References
| RefSeq | YP_005928257.1 |
| GI | 386009980 |
| EC Number | 2.1.2.1 |
| Entrez | 12518584 |
| NCBI Locus Tag | PPUBIRD1_0353 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
GlyA protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -4.27 |
| Kyte-Doolittle Hydrophobicity Value | -0.076 |
| Molecular Weight (kDa) | 44.6 |
| Isoelectric Point (pI) | 6.37 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 654 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003094 (1150 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_0353
Search term: glyA
Search term: GlyA protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value:
1.1e-92
Percent Identity:
47.6
|
|
Ensembl
110, assembly
GRCh38.p14
|
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value:
1.1e-92
Percent Identity:
47.6
|
|
Ensembl
110, assembly
GRCh38.p14
|
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value:
1.1e-92
Percent Identity:
47.6
|
|
Ensembl
110, assembly
GRCh38.p14
|
serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]
E-value:
1.1e-92
Percent Identity:
47.6
|
References
No references are associated with this feature.