Pseudomonas putida BIRD-1, PPUBIRD1_2268

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_2268
Name
Replicon chromosome
Genomic location 2580024 - 2581031 (- strand)

Cross-References

RefSeq YP_005930108.1
GI 386011831
Entrez 12520472
NCBI Locus Tag PPUBIRD1_2268

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 3.05
Kyte-Doolittle Hydrophobicity Value -0.127
Molecular Weight (kDa) 37.1
Isoelectric Point (pI) 8.19

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3GRA Transcription regulator 03/25/09 Crystal structure of AraC family transcriptional regulator from Pseudomonas putida Pseudomonas putida 2.3 X-RAY DIFFRACTION 99.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 386 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001516 (480 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_2268

Human Homologs

References

No references are associated with this feature.