Pseudomonas putida BIRD-1, PPUBIRD1_3220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas putida BIRD-1
Locus Tag
PPUBIRD1_3220
Name
Replicon chromosome
Genomic location 3603775 - 3604683 (- strand)

Cross-References

RefSeq YP_005931024.1
GI 386012747
EC Number 2.7.1.15
Entrez 12521389
NCBI Locus Tag PPUBIRD1_3220

Product

Feature Type CDS
Coding Frame 1
Product Name
Ribokinase
Synonyms
Evidence for Translation
Charge (pH 7) -8.71
Kyte-Doolittle Hydrophobicity Value 0.227
Molecular Weight (kDa) 31.0
Isoelectric Point (pI) 4.78

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 547 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003482 (500 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_3220
Search term: Ribokinase

Human Homologs

Ensembl 94, assembly GRCh38.p12
ribokinase [Source:HGNC Symbol;Acc:HGNC:30325]
E-value: 5.7e-44
Percent Identity: 39.4

References

No references are associated with this feature.