Pseudomonas putida BIRD-1, PPUBIRD1_4747 (pgk)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_4747
Name
pgk
Replicon chromosome
Genomic location 5302636 - 5303799 (- strand)

Cross-References

RefSeq YP_005932510.1
GI 386014233
Entrez 12522921
NCBI Locus Tag PPUBIRD1_4747

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -9.12
Kyte-Doolittle Hydrophobicity Value 0.284
Molecular Weight (kDa) 40.0
Isoelectric Point (pI) 4.84

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6HXE TRANSFERASE 10/17/18 Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18 in complex with 3-phosphoglycerate Pseudomonas sp. 'TAC II 18' 2.1 X-RAY DIFFRACTION 91.2
6I06 TRANSFERASE 10/25/18 Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18 Pseudomonas 2 X-RAY DIFFRACTION 91.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 664 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000536 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_4747
Search term: pgk

Human Homologs

Ensembl 110, assembly GRCh38.p14
phosphoglycerate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8896]
E-value: 7.5e-64
Percent Identity: 38.2

References

No references are associated with this feature.