Pseudomonas putida HB3267, B479_09480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_09480
Name
Replicon chromosome
Genomic location 2106744 - 2107460 (+ strand)

Cross-References

RefSeq YP_007228743.1
GI 431801840
Entrez 14288291
INSDC AGA72800.1
NCBI Locus Tag B479_09480
UniParc UPI0002173700
UniProtKB Acc L0FJF7
UniProtKB ID L0FJF7_PSEPU
UniRef100 UniRef100_A0A099MZK5
UniRef50 UniRef50_C1DHB3
UniRef90 UniRef90_Q1IC75

Product

Feature Type CDS
Coding Frame 1
Product Name
GntR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -0.65
Kyte-Doolittle Hydrophobicity Value -0.535
Molecular Weight (kDa) 27.1
Isoelectric Point (pI) 6.86

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7XP0 SIGNALING PROTEIN 05/02/22 Crystal structure of PmiR from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 2.61 X-RAY DIFFRACTION 91.9
7XP1 SIGNALING PROTEIN 05/02/22 Crystal structure of PmiR from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 2.5 X-RAY DIFFRACTION 91.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 396 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000770 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_09480

Human Homologs

References

No references are associated with this feature.