Pseudomonas syringae pv. syringae B728a, Psyr_2084

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_2084
Name
Replicon chromosome
Genomic location 2429677 - 2430396 (+ strand)

Cross-References

RefSeq YP_235165.1
GI 66045324
Entrez 3367598
INSDC AAY37127.1
NCBI Locus Tag Psyr_2084
UniParc UPI0000394CD2
UniProtKB Acc Q4ZUP5
UniProtKB ID Q4ZUP5_PSEU2
UniRef100 UniRef100_Q4ZUP5
UniRef50 UniRef50_G8Q028
UniRef90 UniRef90_Q48K01

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator GntR
Synonyms
Evidence for Translation
Charge (pH 7) 1.11
Kyte-Doolittle Hydrophobicity Value -0.517
Molecular Weight (kDa) 27.2
Isoelectric Point (pI) 7.32

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7XP1 SIGNALING PROTEIN 05/02/22 Crystal structure of PmiR from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 2.5 X-RAY DIFFRACTION 92.0
7XP0 SIGNALING PROTEIN 05/02/22 Crystal structure of PmiR from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 2.61 X-RAY DIFFRACTION 92.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 392 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000770 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_2084

Human Homologs

References

No references are associated with this feature.