Pseudomonas syringae pv. syringae B728a, Psyr_3951 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_3951
Name
rnc
Replicon chromosome
Genomic location 4698686 - 4699375 (- strand)

Cross-References

RefSeq YP_237019.1
GI 66047178
EC Number 3.1.26.3
Entrez 3369486
INSDC AAY38981.1
NCBI Locus Tag Psyr_3951
UniParc UPI000050DA6B
UniProtKB Acc Q4ZPE1
UniProtKB ID RNC_PSEU2
UniRef100 UniRef100_Q4ZPE1
UniRef50 UniRef50_Q4KHT1
UniRef90 UniRef90_Q4KHT1

Product

Feature Type CDS
Coding Frame 1
Product Name
ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7) -4.36
Kyte-Doolittle Hydrophobicity Value -0.159
Molecular Weight (kDa) 25.6
Isoelectric Point (pI) 5.23

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000744 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_3951
Search term: rnc
Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 3.0e-12
Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 3.0e-12
Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 3.0e-12
Percent Identity: 33.6

References

No references are associated with this feature.