Pseudomonas syringae pv. syringae B728a, Psyr_4008

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_4008
Name
Replicon chromosome
Genomic location 4772247 - 4775381 (+ strand)

Cross-References

RefSeq YP_237076.1
GI 66047235
Entrez 3369544
INSDC AAY39038.1
NCBI Locus Tag Psyr_4008
UniParc UPI000050DA91
UniProtKB Acc Q4ZP84
UniProtKB ID Q4ZP84_PSEU2
UniRef100 UniRef100_Q4ZP84
UniRef50 UniRef50_P24177
UniRef90 UniRef90_Q48EP3

Product

Feature Type CDS
Coding Frame 1
Product Name
hydrophobe/amphiphile efflux-1 HAE1
Synonyms
Evidence for Translation
Charge (pH 7) -6.92
Kyte-Doolittle Hydrophobicity Value 0.290
Molecular Weight (kDa) 112.4
Isoelectric Point (pI) 5.78

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 760.0 42.22 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 487 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_4008

Human Homologs

References

No references are associated with this feature.