Pseudomonas syringae pv. syringae B728a, Psyr_4790 (pgk)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_4790
Name
pgk
Replicon chromosome
Genomic location 5677155 - 5678318 (- strand)

Cross-References

RefSeq YP_237855.1
GI 66048014
EC Number 2.7.2.3
Entrez 3370340
INSDC AAY39817.1
NCBI Locus Tag Psyr_4790
UniParc UPI000050DB74
UniProtKB Acc Q4ZM05
UniProtKB ID PGK_PSEU2
UniRef100 UniRef100_Q4ZM05
UniRef50 UniRef50_P43726
UniRef90 UniRef90_Q88AK3

Product

Feature Type CDS
Coding Frame 1
Product Name
phosphoglycerate kinase
Synonyms
Evidence for Translation
Charge (pH 7) -10.87
Kyte-Doolittle Hydrophobicity Value 0.242
Molecular Weight (kDa) 40219.8
Isoelectric Point (pI) 4.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6I06 TRANSFERASE 10/25/18 Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18 Pseudomonas 2 X-RAY DIFFRACTION 92.5
6HXE TRANSFERASE 10/17/18 Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18 in complex with 3-phosphoglycerate Pseudomonas sp. 'TAC II 18' 2.1 X-RAY DIFFRACTION 92.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 664 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000536 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_4790
Search term: pgk

Human Homologs

Ensembl 110, assembly GRCh38.p14
phosphoglycerate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8896]
E-value: 1.9e-62
Percent Identity: 37.5

References

No references are associated with this feature.