Pseudomonas syringae pv. syringae B728a, Psyr_5008
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest |
| Locus Tag |
Psyr_5008
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5940336 - 5941073 (+ strand) |
Cross-References
| RefSeq | YP_238073.1 |
| GI | 66048232 |
| Entrez | 3370560 |
| NCBI Locus Tag | Psyr_5008 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
transcriptional regulator GntR
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.66 |
| Kyte-Doolittle Hydrophobicity Value | -0.330 |
| Molecular Weight (kDa) | 27400.2 |
| Isoelectric Point (pI) | 7.80 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3C7J | TRANSCRIPTION REGULATOR | 02/07/08 | Crystal structure of transcriptional regulator (GntR family member) from Pseudomonas syringae pv. tomato str. DC3000 | Pseudomonas syringae pv. tomato | 2.1 | X-RAY DIFFRACTION | 95.7 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 336 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001218 (1274 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: Psyr_5008
Search term: transcriptional regulator GntR
|
Human Homologs
References
No references are associated with this feature.