Pseudomonas aeruginosa UCBPP-PA14, PA14_41570 (oprF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_41570
Name
oprF
Replicon chromosome
Genomic location 3712447 - 3713499 (- strand)
Transposon Mutants 2 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq YP_791468.1
GI 116049726
Entrez 4382883
INSDC ABJ10962.1
NCBI Locus Tag PA14_41570
UniParc UPI000002B99B
UniProtKB Acc Q02KR8
UniProtKB ID Q02KR8_PSEAB
UniRef100 UniRef100_P13794
UniRef50 UniRef50_P13794
UniRef90 UniRef90_P13794

Product

Feature Type CDS
Coding Frame 1
Product Name
major porin and structural outer membrane porin OprF precursor
Synonyms
Evidence for Translation
Charge (pH 7) -11.67
Kyte-Doolittle Hydrophobicity Value -0.443
Molecular Weight (kDa) 37.6
Isoelectric Point (pI) 4.75

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4RLC TRANSPORT PROTEIN 10/16/14 Crystal structure of the N-terminal beta-barrel domain of Pseudomonas aeruginosa OprF Pseudomonas aeruginosa 1.6 X-RAY DIFFRACTION 100.0
5U1H PEPTIDE BINDING PROTEIN 11/28/16 Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.5 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 441 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003618 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_41570
Search term: oprF

Human Homologs

References

No references are associated with this feature.