Pseudomonas aeruginosa PA7, PSPA7_0617 (nirF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa PA7
GCF_000017205.1|latest
Locus Tag
PSPA7_0617
Name
nirF
Replicon chromosome
Genomic location 635720 - 636898 (- strand)

Cross-References

RefSeq YP_001346012.1
GI 152988063
Entrez 5359361
INSDC ABR85246.1
NCBI Locus Tag PSPA7_0617
UniParc UPI0000D73421
UniProtKB Acc A6UYX7
UniProtKB ID A6UYX7_PSEA7
UniRef100 UniRef100_A6UYX7
UniRef50 UniRef50_Q51480
UniRef90 UniRef90_Q51480

Product

Feature Type CDS
Coding Frame 1
Product Name
heme d1 biosynthesis protein NirF
Synonyms
Evidence for Translation
Charge (pH 7) -3.86
Kyte-Doolittle Hydrophobicity Value -0.259
Molecular Weight (kDa) 43361.7
Isoelectric Point (pI) 6.25

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6TV9 UNKNOWN FUNCTION 01/09/20 Heme d1 biosynthesis associated Protein NirF in complex with dihydro-heme d1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.893 X-RAY DIFFRACTION 98.7
6TV2 UNKNOWN FUNCTION 01/08/20 Heme d1 biosynthesis associated Protein NirF Pseudomonas aeruginosa PAO1 1.561 X-RAY DIFFRACTION 98.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 71 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000494 (709 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPA7_0617
Search term: nirF

Human Homologs

References

No references are associated with this feature.