Pseudomonas aeruginosa DK2, PADK2_21840 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas aeruginosa DK2
GCF_000271365.1|latest
Locus Tag
PADK2_21840
Name
rnc
Replicon chromosome
Genomic location 4696668 - 4697357 (- strand)

Cross-References

RefSeq YP_006484337.1
GI 392985750
EC Number 3.1.26.3
Entrez 13172883
NCBI Locus Tag PADK2_21840

Product

Feature Type CDS
Coding Frame 1
Product Name
ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7) -1.40
Kyte-Doolittle Hydrophobicity Value -0.252
Molecular Weight (kDa) 25.5
Isoelectric Point (pI) 6.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000744 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PADK2_21840
Search term: rnc
Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
dicer 1, ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17098]
E-value: 2.7e-13
Percent Identity: 27.4

References

No references are associated with this feature.