Pseudomonas stutzeri A1501, PST_3939 (ttgB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas stutzeri A1501
GCF_000013785.1|latest
Locus Tag
PST_3939
Name
ttgB
Replicon chromosome
Genomic location 4270532 - 4273669 (- strand)

Cross-References

RefSeq YP_001174404.1
GI 146284251
Entrez 5096900
INSDC ABP81562.1
NCBI Locus Tag PST_3939
UniParc UPI00014FF1C6
UniProtKB Acc A4VRG1
UniProtKB ID A4VRG1_PSEU5
UniRef100 UniRef100_A4VRG1
UniRef50 UniRef50_P24177
UniRef90 UniRef90_A4VRG1

Product

Feature Type CDS
Coding Frame 1
Product Name
multidrug/solvent RND transporter TtgB
Synonyms
Evidence for Translation
Charge (pH 7) -7.64
Kyte-Doolittle Hydrophobicity Value 0.326
Molecular Weight (kDa) 113051.9
Isoelectric Point (pI) 5.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 763.1 41.57 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 487 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PST_3939
Search term: ttgB

Human Homologs

References

No references are associated with this feature.