Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_1131 (rpoE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1
GCF_000219605.1|latest
Locus Tag
PSTAB_1131
Name
rpoE
Replicon chromosome
Genomic location 1190593 - 1191174 (+ strand)

Cross-References

RefSeq YP_004713501.1
GI 339493208
Entrez 10942174
INSDC AEJ04412.1
NCBI Locus Tag PSTAB_1131
UniParc UPI00014FF2CF
UniProtKB Acc F8H1B4
UniProtKB ID F8H1B4_PSEUT
UniRef100 UniRef100_A0A023WV94
UniRef50 UniRef50_D0ZSY9
UniRef90 UniRef90_Q06198

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor AlgU
Synonyms
Evidence for Translation
Charge (pH 7) -5.35
Kyte-Doolittle Hydrophobicity Value -0.479
Molecular Weight (kDa) 22.3
Isoelectric Point (pI) 5.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6IN7 TRANSCRIPTION 10/24/18 Crystal structure of AlgU in complex with MucA(cyto) Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.96 X-RAY DIFFRACTION 91.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000736 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSTAB_1131
Search term: rpoE

Human Homologs

References

No references are associated with this feature.