Pseudomonas stutzeri RCH2, Psest_3100

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri RCH2
GCF_000327065.1|latest
Locus Tag
Psest_3100
Name
Replicon chromosome
Genomic location 3278434 - 3279015 (- strand)

Cross-References

RefSeq YP_007241226.1
GI 431928192
Entrez 14300949
INSDC AGA87596.1
NCBI Locus Tag Psest_3100
UniParc UPI00014FF2CF
UniProtKB Acc L0GNM7
UniProtKB ID L0GNM7_PSEST
UniRef100 UniRef100_A0A023WV94
UniRef50 UniRef50_D0ZSY9
UniRef90 UniRef90_Q06198

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase, sigma-24 subunit, RpoE
Synonyms
Evidence for Translation
Charge (pH 7) -5.35
Kyte-Doolittle Hydrophobicity Value -0.479
Molecular Weight (kDa) 22.3
Isoelectric Point (pI) 5.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6IN7 TRANSCRIPTION 10/24/18 Crystal structure of AlgU in complex with MucA(cyto) Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.96 X-RAY DIFFRACTION 91.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000736 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psest_3100

Human Homologs

References

No references are associated with this feature.