Pseudomonas mendocina NK-01, MDS_0073

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_0073
Name
Replicon	chromosome
Genomic location	86630 - 87136 (- strand)

Cross-References

RefSeq	YP_004377856.1
GI	330500987
Entrez	10454855
INSDC	AEB56104.1
NCBI Locus Tag	MDS_0073
UniParc	UPI000206E9AF
UniProtKB Acc	F4DV89
UniProtKB ID	F4DV89_PSEMN
UniRef100	UniRef100_F4DV89
UniRef50	UniRef50_Q9I7A8
UniRef90	UniRef90_F4DV89

Product

Feature Type	CDS
Coding Frame	1
Product Name	peptide deformylase
Synonyms
Evidence for Translation
Charge (pH 7)	-6.13
Kyte-Doolittle Hydrophobicity Value	-0.448
Molecular Weight (kDa)	19.3
Isoelectric Point (pI)	4.94

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
1N5N	HYDROLASE	11/06/02	Crystal Structure of Peptide Deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	1.8	X-RAY DIFFRACTION	90.4
1S17	HYDROLASE	01/05/04	Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors	Pseudomonas aeruginosa	1.95	X-RAY DIFFRACTION	90.4

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 587 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000019 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_0073 Search term: peptide deformylase

Human Homologs

References