Pseudomonas mendocina NK-01, MDS_0074

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0074
Name
Replicon chromosome
Genomic location 87289 - 88326 (+ strand)

Cross-References

RefSeq YP_004377857.1
GI 330500988
Entrez 10454856
INSDC AEB56105.1
NCBI Locus Tag MDS_0074
UniParc UPI000206E9B0
UniProtKB Acc F4DV90
UniProtKB ID F4DV90_PSEMN
UniRef100 UniRef100_F4DV90
UniRef50 UniRef50_C1DFV9
UniRef90 UniRef90_W6R9V1

Product

Feature Type CDS
Coding Frame 1
Product Name
peptidoglycan-binding LysM
Synonyms
Evidence for Translation
Charge (pH 7) -4.06
Kyte-Doolittle Hydrophobicity Value -0.254
Molecular Weight (kDa) 38085.1
Isoelectric Point (pI) 5.50

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 112 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000020 (467 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0074

Human Homologs

References

No references are associated with this feature.