Pseudomonas mendocina NK-01, MDS_0129

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0129
Name
Replicon chromosome
Genomic location 141462 - 142886 (+ strand)

Cross-References

RefSeq YP_004377912.1
GI 330501043
Entrez 10454911
INSDC AEB56160.1
NCBI Locus Tag MDS_0129
UniParc UPI000206EA11
UniProtKB Acc F4DW30
UniProtKB ID F4DW30_PSEMN
UniRef100 UniRef100_F4DW30
UniRef50 UniRef50_Q4JVP2
UniRef90 UniRef90_A0A028V8I3

Product

Feature Type CDS
Coding Frame 1
Product Name
aspartate ammonia-lyase
Synonyms
Evidence for Translation
Charge (pH 7) -7.46
Kyte-Doolittle Hydrophobicity Value 0.079
Molecular Weight (kDa) 51.0
Isoelectric Point (pI) 5.80

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 604 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004982 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0129

Human Homologs

Ensembl 110, assembly GRCh38.p14
fumarate hydratase [Source:HGNC Symbol;Acc:HGNC:3700]
E-value: 8.6e-94
Percent Identity: 40.1

References

No references are associated with this feature.