Pseudomonas mendocina NK-01, MDS_0471

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0471
Name
Replicon chromosome
Genomic location 503977 - 504696 (- strand)

Cross-References

RefSeq YP_004378254.1
GI 330501385
Entrez 10455253
INSDC AEB56502.1
NCBI Locus Tag MDS_0471
UniParc UPI000206E8F4
UniProtKB Acc F4DZS4
UniProtKB ID F4DZS4_PSEMN
UniRef100 UniRef100_F4DZS4
UniRef50 UniRef50_S6AC35
UniRef90 UniRef90_W6QQY9

Product

Feature Type CDS
Coding Frame 1
Product Name
16S ribosomal RNA methyltransferase RsmE
Synonyms
Evidence for Translation
Charge (pH 7) -2.92
Kyte-Doolittle Hydrophobicity Value -0.079
Molecular Weight (kDa) 26.1
Isoelectric Point (pI) 6.42

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 535 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000410 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0471

Human Homologs

References

No references are associated with this feature.