Pseudomonas mendocina NK-01, MDS_1523

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_1523
Name
Replicon	chromosome
Genomic location	1663133 - 1663714 (+ strand)

Cross-References

RefSeq	YP_004379306.1
GI	330502437
Entrez	10456304
INSDC	AEB57554.1
NCBI Locus Tag	MDS_1523
UniParc	UPI0000E77956
UniProtKB Acc	F4DY14
UniProtKB ID	F4DY14_PSEMN
UniRef100	UniRef100_F4DY14
UniRef50	UniRef50_D0ZSY9
UniRef90	UniRef90_Q06198

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma factor AlgU
Synonyms
Evidence for Translation
Charge (pH 7)	-5.83
Kyte-Doolittle Hydrophobicity Value	-0.456
Molecular Weight (kDa)	22.2
Isoelectric Point (pI)	5.14

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6IN7	TRANSCRIPTION	10/24/18	Crystal structure of AlgU in complex with MucA(cyto)	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	1.96	X-RAY DIFFRACTION	90.7

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000736 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_1523 Search term: RNA polymerase sigma factor AlgU

Human Homologs

References