Pseudomonas mendocina NK-01, MDS_3151

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_3151
Name
Replicon chromosome
Genomic location 3475088 - 3476869 (- strand)

Cross-References

RefSeq YP_004380934.1
GI 330504065
Entrez 10457933
INSDC AEB59182.1
NCBI Locus Tag MDS_3151
UniParc UPI000206DCC1
UniProtKB Acc F4DM60
UniProtKB ID F4DM60_PSEMN
UniRef100 UniRef100_F4DM60
UniRef50 UniRef50_D7I2P8
UniRef90 UniRef90_W6QT63

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) 1.61
Kyte-Doolittle Hydrophobicity Value 0.231
Molecular Weight (kDa) 64931.7
Isoelectric Point (pI) 7.40

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000827 (524 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_3151
Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 1.5e-55
Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 1.5e-55
Percent Identity: 32.3

References

No references are associated with this feature.