Pseudomonas mendocina NK-01, MDS_4448

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_4448
Name
Replicon chromosome
Genomic location 4877832 - 4880849 (- strand)

Cross-References

RefSeq YP_004382231.1
GI 330505362
Entrez 10459230
INSDC AEB60479.1
NCBI Locus Tag MDS_4448
UniParc UPI000206E365
UniProtKB Acc F4DN68
UniProtKB ID F4DN68_PSEMN
UniRef100 UniRef100_F4DN68
UniRef50 UniRef50_Q9HTE6
UniRef90 UniRef90_A4XZW0

Product

Feature Type CDS
Coding Frame 1
Product Name
sarcosine oxidase subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7) 3.04
Kyte-Doolittle Hydrophobicity Value -0.231
Molecular Weight (kDa) 109255.4
Isoelectric Point (pI) 7.35

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 494 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004972 (512 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_4448

Human Homologs

Ensembl 110, assembly GRCh38.p14
dimethylglycine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24475]
E-value: 2.1e-33
Percent Identity: 27.6

References

No references are associated with this feature.