Pseudomonas mendocina NK-01, MDS_4513

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_4513
Name
Replicon	chromosome
Genomic location	4945733 - 4946215 (+ strand)

Cross-References

RefSeq	YP_004382296.1
GI	330505427
Entrez	10459295
INSDC	AEB60544.1
NCBI Locus Tag	MDS_4513
UniParc	UPI000206E44D
UniProtKB Acc	F4DP17
UniProtKB ID	F4DP17_PSEMN
UniRef100	UniRef100_F4DP17
UniRef50	UniRef50_Q8ZL48
UniRef90	UniRef90_Q88AH3

Product

Feature Type	CDS
Coding Frame	1
Product Name	phosphopantetheine adenylyltransferase
Synonyms
Evidence for Translation
Charge (pH 7)	1.43
Kyte-Doolittle Hydrophobicity Value	-0.020
Molecular Weight (kDa)	17.8
Isoelectric Point (pI)	7.94

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
5X6F	TRANSFERASE	02/21/17	Crystal structure of Phosphopantetheine adenylyltransferase from Pseudomonas aeruginosa	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	2.593	X-RAY DIFFRACTION	92.5
3X1K	TRANSFERASE	11/20/14	crystal structure of Phosphoapantetheine adenylyltransferase PPAT/CoaD with AMP-PNP from Pseudomonas aerugonosa	Pseudomonas aeruginosa 2192	2.547	X-RAY DIFFRACTION	92.5
3X1J	TRANSFERASE	11/19/14	Crystal Structure of Phosphopantetheine adenylyltransferase (PPAT/CoaD) with AcCoA from Pseudomonas aeruginosa	Pseudomonas aeruginosa 2192	2.334	X-RAY DIFFRACTION	92.5
5TS2	TRANSFERASE	10/27/16	Crystal structure of a phosphopantetheine adenylyltransferase (CoaD, PPAT) from Pseudomonas aeruginosa bound to dephospho coenzyme A	Pseudomonas aeruginosa (strain LESB58)	2.3	X-RAY DIFFRACTION	92.4
3X1M	TRANSFERASE	11/24/14	Crystal structure of Phosphopantetheine adenylyltransferase/PPAT from Pseudomonas aeruginosa with CoA	Pseudomonas aeruginosa 2192	2.5	X-RAY DIFFRACTION	92.5
4RUK	TRANSFERASE	11/20/14	crystal structure of Phosphoapantetheine adenylyltransferase PPAT/CoaD with CoA and pyrophosphate from Pseudomonas aeruginosa	Pseudomonas aeruginosa 2192	2.2	X-RAY DIFFRACTION	92.5

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 578 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000354 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_4513 Search term: phosphopantetheine adenylyltransferase

Human Homologs

References